Optimizing predictive models using knowledge derived from proprietary data  

In Silico Insider: Candice Johnson, PhD

Computational methods are essential for evaluating the potential risks of compounds that lack experimental data, with skin sensitization being a critical endpoint in chemical safety assessments. The integration of knowledge derived from proprietary data sources into in silico models has previously been shown to increase the predictive accuracy and reliability of in silico models. 

Optimizing predictive models using knowledge derived from proprietary data

Recently, Leadscope has collaborated with the industry to update our skin sensitization models. The effort included integrating knowledge derived from proprietary data sources into the knowledge base of the expert rules-based system.  Additionally, several hundred new structures were added to the training and reference databases. Through a collaborative effort with industry partners, historical skin sensitization data were collected for 925 compounds assessed in the Local Lymph Node Assay (LLNA) or Guinea Pig Maximization Test (GPMT). The updated models demonstrated 82% accuracy in predicting strong/extreme sensitization outcomes in a proprietary dataset. This study supports the hypothesis that knowledge from corporate databases can advance in silico models with expanded predictive capabilities and performance.  

We are excited to share the results of this collaborative effort in a symposium titled ‘Extraction of Knowledge from Proprietary Datasets for the Advancement of QSAR Models’ at the SOT 64th Annual Meeting and ToxExpo in Orlando, Florida (Wednesday, March 19th, 9.05 AM-9.35 AM, Room W203A).

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Candice Johnson, PhD

Candice Johnson, PhD is a Senior Research Scientist at Instem. Dr. Johnson has co-authored several peer-reviewed publications describing the implementation of in silico approaches and methodologies for gaining confidence in in silico predictions. Her work expands into novel application of in silico approaches and supports the advancement of alternative methods. She is particularly interested in the application of computational tools to support toxicological evaluations; for example, in the assessment of extractables and leachables.

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